• Gomez, L. D.,Vanholme, R., Bird, S., Goeminne, G.,Trindade, L.M., Polikarpov, I., Simister, R.,Morreel, K., Boerjan, W. & McQueen-Mason, S. J. (2014)"Side by side comparison of chemical compounds generated by aqueous pretreatments of maize stover, miscanthus and sugarcane bagasse.” Bioenerg. Res. 7(4) 1466-1480
   
• Busse-wicher, M., Gomes, T.C.F., Tryfona, T., Nikolovski, N., Stott, K., Grantham, N. J., Bolam, D.N.,Skaf, M.S. & Dupree, P. (2014)
  The pattern of xylan acetylation suggests xylan may interact with cellulose microfibrils as a two-fold helical screw in the secondary plant cell wall of Arabidopsis thaliana. The Plant Journal 79(3) 492-506
   
• Lima, M.A.,Gomez, L.D., Steele-King, C.G., Simister, R.,Bernardinelli, O.D., Carvalho, M.A.,Rezende, C.A., Labate, C.A., de Azevedo,E.R., McQueen-Mason, S.J. & Polikarpov, I. (2014) Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production. Biotechnology for Biofuels 7: 10
   
• Afionis, Stavros & Lindsay C. Stringer (2014). The environment as a strategic priority in the European Union - Brazil partnership: is the EU behaving as a normative power or soft imperialist? International Environmental Agreements: Politics, Law & Economics. DOI: 10.1007/s10784-013-9232-3.
   
• McQueen-Mason (2013) Developing sustainable biofuels. Pan European Networks 7: 244-245
   
• Fan, J., De bruyn, M., Zhu, Z., Budarin, V., Gronnow, M.J.,Gomez, L.D., Macquarrie, D.J. & Clark, J.H. (2013) Microwave-enhanced Formation of Glucose from Cellulosic Waste Chemical Engineering and Processing: Process Intensification. Chemical Engineering and Processing: Process Intensification, doi:10.1016/j.cep.2013.01.004.
   
• Van der Weijde T, Alvim Kamei C.L., Torres A.F., Vermerris W., Dolstra O., Visser R.G.F., Trindade L.M. (2013) The potential of C4 grasses for cellulosic biofuel production. Frontiers in Plant Biotechnology, 4:107 (doi: 10.3389/fpls.2013.00107)
   
  
• Lima, M.A., Lavorente G. B, da Silva H.K.P., Bragatto J., Rezende C.A., Bernardinelli O.D., deAzevedo E.R., Gomez L.D., McQueen-Mason S.J., Labate C.A. and Polikarpov I. (2013) Effects of pretreatment on morphology, chemical composition and enzymatic digestibility of eucalyptus bark: a potentially valuable source of fermentable sugars for biofuel production – part 1 Biotechnology for Biofuels, 6:75. (doi:10.1186/1754-6834-6-75)
   
  
• Bottcher A, Cesarino I, Santos AB, Vicentini R, Mayer JL, Vanholme R, Morreel K, Goeminne G, Moura JC, Nobile PM, Carmello-Guerreiro SM, Anjos IA, Creste S, Boerjan W, Landell MG, Mazzafera P. (2013) Lignification in sugarcane: biochemical characterization, gene discovery and expression analysis in two genotypes contrasting for lignin content. Plant Physiol.
   
• Afionis S and Stringer L. C. (2012) European Union leadership in biofuels regulation: Europe as a normative power? Journal of Cleaner Production 32 :114-123 (doi: 10.1016/j.jclepro.2012.03.034)
   
• Kamwilaisak, K., & Wright, P. C. (2012) Investigating Laccase and Titanium Dioxide for Lignin Degradation. Energy & Fuels, 26(4) :2400–2406. (doi:10.1021/ef3000533)

CeProBIO Publications

• Bleicher, L., Prates, E., Gomes, T., Silveira, R., Nascimento, A., Rojas, A., Golubev, A., Martinez, L., Skaf, M. and Polikarpov, I. (2011) “Molecular basis of the thermostability and thermophilicity of laminarinases: X-ray structure of the hyperthermostable laminarinase from Rhodothermus marinus and molecular dynamics simulations” J. Phys. Chem. B 115: 7940–7949.
   
• Colussi, F., Serpa, V., Delabona, P.S., Manzine, L.R., Voltatódio, M.L., Alves, R., Mello, B.L., Pereira Jr., N., Farinas, C.S., Golubev, A.M., Santos, M.A.M. & Polikarpov, I. (2011) “Purification, biochemical and biophysical characterization of cellobiohydrolase I from Trichoderma harzianum IOC 3844” J. Microbiol. Biotech. 21: 808–817.
   
• Colussi, F., Garcia, W., Rosseto, F.R., Soares de Mello, B.L.,  de Oliveira Neto, M. and Polikarpov, Igor (2012) “Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum” Eur. Biophysics J. 41: 89-98
   
• Dal-Bianco, M., Carneiro, M.S., Hotta, C.T., Chapola, R.G., Hoffmann, H.P., Garcia, A.A.F. & Souza, G.M. (2012) “Sugarcane improvement: how far can we go?” Current Opinion Biothechnol. 23: 265-270
   
• Damásio, A.R.L., Fraga C Ribeiro, L., Ribeiro, L.F., Furtado, G.P., Segato, F., Almeida, F.B.R., Crivellari, A.C., Phd; Buckeridge, M.S., Souza, T.A.C.B., Murakami, M.T., Ward, R.J., Prade, R.A., Polizeli, Mdl.T.M. (2012) “A Xyloglucan-Specific Endo-β-1,4-Glucanase (GH12) from Aspergillus niveus: Secretion in Aspergillus nidulans” Biochim. Biophys. Acta (Proteins and Proteomics) 1824: 451-457.
   
• Furtado, G.P., Ribeiro, L.F., Santos, C.R., Tonoli, C.C., De Souza, A.R., Oliveira, R.R., Murakami, M.T., Ward, R.J. (2011) “Biochemical and Structural Characterization of a β-1,3-1,4-glucanase from Bacillus subtilis 168” Process Biochem. 46:1202-1206.
   
• Hidalgo-Cuadrado, N., Arellano, J.B., Calvete, J.J., Sanz, L., Zhadan, G.G., Textor, L.C., Polikarpov, I., Bursakov, S.A., Roig, M.G. & Shnyrov, V. L. (2011) “Palm peroxidades: the most robust enzymes” Current Topics Biochem. Res. 13:67-79
   
• Maeda, R.N., Serpa, V.I., Rocha, V.A.L. Mesquita, R.A.A., Santa Anna, L.M.M, Machado de Castro, A., Driemeier, C.E., Pereira Jr., N. and Polikarpov, I. (2011) “Enzymatic hydrolysis of pretreated sugar cane bagasse using Penicillium funiculosum and Trichoderma harzianum cellulases” Proc. Biochem. 46: 1196 – 1201.
   
• Marconi, T.G., Costa, E.A., Miranda, H. R. C. A. N., Mancini, M.C.,  Cardoso-Silva, C.B., Oliveira, K. M., Pinto, L.R., Mollinari, M.,  Garcia, A. A. F., Souza, A. P. (2011) “Functional markers for gene mapping and genetic diversity studies in sugarcane” BMC Research Notes 4:264
   
• Martinez, L., Figueira, A.C., Webb, P., Polikarpov, I. & Skaf, M. (2011)  "Mapping the intramolecular vibrational energy flow in proteins reveals functionally important residues" J. Phys. Chem. Lett. 2: 2073–2078.
   
• Maziero, P.,  de Oliveira Neto, M., Machado, D., Batista, T., Cavalheiro, C.C.S., Neumann, M.G., Craievich, A.F., Rocha, G.J.M., Polikarpov, I. &  Gonçalves, A.R. (2012)  "Structural features of lignin obtained at different alkaline oxidation conditions from sugarcane bagasse" Indust. Crops Prod. 35:61– 69
   
• Matsuoka, S. & Garcia, A.A.F. (2011) “Sugarcane Underground Organs: Going Deep for Sustainable Production.” Tropical Plant Biol. 4:22–30.
• Nazaret Hidalgo Cuadrado, N.H., Arellano, J.B., Calvete, J.J., Sanz. L., Zhadan, G.G., Polikarpov, I., Bursakov, S., Roig, M.G. & Shnyrov, V.L. (2012) “Substrate specificity of the Chamaerops excelsa palm tree peroxidase. A steady-state kinetic study” J. Mol. Catalysis B: Enzymatic 74: 103–108
   
• Pastina, M.M., Malosetti, M., Gazaffi, R., Mollinari, M., Margarido, G., Oliveira, K., Pinto, L., Souza, A., van Eeuwijk, F. & Garcia, A.A.F. (2012) “A Mixed-Model QTL Analysis for Sugarcane Multiple-Harvest-Location Trial Data.” Theor. Appl. Genetics 124:835-849.
   
• Pinto, L. R., Leite, D.C. , Favero, T. M., Pastina, M.M., Garcia, A.A.F., Perecin, D., Gonçalves, B.S., Crestes, S., Xavier, M.A., Bidóia, M.A.P. , Landell, M. &  Souza, A.P. (2011) “Identification of microsatellites markers associated with yield components and quality parameters in sugarcane” Int. Sugar J. 113:56-60,.
   
• Rezende, C.A., Lima, M.A., Maziero, P., Ribeiro deAzevedo, E., Garcia, W. & Polikarpov I. (2011) “Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility” Biotechnol Biofuels. 4: 54.
   
• Ribeiro, L.F., Furtado, G.P., Lourenzoni, M.R., Costa-Filho, A.J., Santos, C.R., Peixoto Nogueira, S.C., Betini, J.A., Polizeli, M.L.T.M., Murakami, M.T. & Ward, R.J. (2011) “Engineering bifunctional Laccase-Xylanase chimeras for improved catalytic performance.” J. Biol. Chem. 286: 43026–43038.
   
• Ruller, R., Silva-Rocha, R., Silva., A., Cruz Schneider, M.P. & Ward, R.J. (2011)  “A Practical Teaching Course in Directed Protein Evolution Using the Green Fluorescent Protein (GFP) as a Model” Biochem. Mol. Biol. Education - Special Section: Innovative Laboratory Exercise. 39:21-27.
   
• Santos, C., Paiva, J., Sforca, M., Neves, J., Navarro, R., Cota, J., Akao, P., Hoffmam, Z.B., Meza, A., Smetana, J., Nogueira, M., Polikarpov, I., Xavier-Neto, J., Squina, F., Ward, R.J., Ruller, R., Zeri, A.C. & Murakami, M.T. (2012) “Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168” Biochem J. 441:95-104.
   
• Serang, O., Mollinari, M. & Garcia, A.A.F. (2012) “Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids” PloS One 7: e30906.
   
• Textor, L.C., Santos, J.C., Cuadrado, N.H., Roig, M.G., Zhadan, G.G., Shnyrov, V.L. and Igor Polikarpov (2011) “Purification, crystallization and preliminary crystallographic analysis of Chamaerops excelsa palm tree peroxidase” Acta Cryst. F67: 1641-1644.
   
• Vizoná Liberato, M., Generoso, W.C., Malagó Jr, W., Henrique-Silva, F. and Polikarpov, I. "Crystallization and preliminary X-ray diffraction analysis of endoglucanase III from Trichoderma harzianum” Acta Cryst. (2012) F68: 306-309
   
• Barcelos, C.A., Maeda, R.N., Betancur, G.J.V. & Pereira Jr, N. “The Essentialness of Delignification on Enzymatic Hydrolysis of Sugar Cane Bagasse Cellulignin for Second Generation Ethanol Production” Waste and Biomass Valorization (2012) 3: 255-260.
   
• Buckeridge M.S., De Souza A.P., Arundale R.A., Anderson-Teixeira K., Delucia E. “Ethanol from Sugarcane in Brazil: A “Midway” Strategy for Increasing Ethanol Production while Maximizing Environmental Benefits” Global Change Biology and Bioenergy (2012) 4: 119-126.
   
• Coletta, V.C., Rezende, C.A., Conceição, F.R., Polikarpov, I. and Guimaraes, F.E.G. “Mapping the lignin distribution in pretreated sugarcane bagasse by confocal and fluorescence lifetime imaging microscopy” Biotechnology for Biofuels (2013) 6: 43.
   
• Colussi, F., Garcia, W., Rosseto, F.R., Mello, B.L.S., Oliveira Neto, M. and Polikarpov, I. “Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum” Eur. Biophysics J. (2012) 41: 89-98.
   
• Dal-Bianco, M., Carneiro, M.S., Hotta, C.T., Chapola, R.G., Hoffmann, H.P., Garcia A.A.F. & Souza, G.M. “Sugarcane improvement: how far can we go?” Current Opinion in Biothechnology (2012) 23: 265-270.
   
• Damásio, A.R.L., Ribeiro, L.F.C., Ribeiro, L.C., Furtado, G.P., Segato, F., Almeida, F.B.R., Crivellari, A.C., Buckerigde, M.S., Souza, T.A.C.B., Murakami, M.T., Ward, R.J., Prade, R.A. & Polizeli, M.L.T.M. (2012). “Functional characterization and oligomerization of a recombinant xyloglucan-specific endo-B-1,4-glucanase (GH12) from Aspergillus niveus” BBA – Prot. Proteom. 1824: 461-467.
   
• de Araújo, E.A., Tomazini Jr,  A., Kadowaki,  M.A.S., Mário  Murakami, T. &  Polikarpov, I.  “Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xantomonas campestris pv.campestris” Acta Cryst. (2013) F69  [doi:10.1107/S174430911301275X ].
   
• Furtado, G.P., Ribeiro, L.F., Lourenzoni, M.R., Ward, R. “A designed bifunctional laccase/β-1,3-1,4-glucanase enzyme shows synergistic sugar release from milled sugar cane bagasse” (2013) J. Prot. Engineering Design and Selection 26: 15–23.
   
• Hargreaves, P.I., Barcelos, C.A., Costa, A.C.A. & Pereira Jr, N. “Production of Ethanol 3G from Kappaphycus alvarezii: Evaluation of Different Process Strategies” Bioresource Technology (2013) 134: 257-263.
   
• Liberato, M.V., Cardoso Generoso, W. Malagó Jr, W., Henrique-Silva, F. and  Polikarpov, I. "Crystallization and preliminary X-ray diffraction analysis of endoglucanase III from Trichoderma harzianum” Acta Cryst. (2012) F68: 306-309.
   
• Lima, M.A., Lavorente, G.B., Silva, H.K.P., Bragatto, J., Rezende, C.A., Bernardinelli, O.D., deAzevedo, E.R., Gomez, L.D., McQueen-Mason, S.J., Labate, C.A., and Polikarpov, I. “Effects of pretreatment on morphology, chemical composition and enzymatic digestibility of eucalyptus bark: a potentially valuable source of fermentable sugars for biofuel production - part 1” Biotechnology for Biofuels (2013) 6:75.
   
• Maeda, R.N., Barcelos, C.A., Anna, L.M.M.S. & Pereira Jr, N. “Cellulase production by Penicillium funiculosum and its application in the hydrolysis of sugar cane bagasse for second generation ethanol production by fed batch operation” J. Biotechnology (2012) 163, 38-44.
   
• Mancini, M.C., Xavier, M.A., Pinto, L. R., Leite, D.C., Landell, M.G.A., Bidóia, M.A.P. & Perecin, D. “Characterization of the genetic variability of a sugarcane commercial cross through yield components and quality parameters” Sugar Tech. (2012) 14: 1.
   
• Pastina, M.M., Malosetti, M., Gazaffi, R., Mollinari, M., Margarido, G., Oliveira, K., Pinto, L., Souza, A., van Eeuwijk, F. & Garcia, A. “A Mixed-Model QTL Analysis for Sugarcane Multiple-Harvest-Location Trial Data.” Theoretical and Applied Genetics (2012) 124: 835-849.
   
• Prates, E.T., Stankovic, I., Silveira, R.L., Liberato, M.V., Silva, F.H., Pereira Jr., N. & Polikarpov, I. & Skaf, M.S. “X-ray structure and molecular dynamics simulations of endoglucanase 3 from Trichoderma harzianum: structural organization and mechanism of substrate recognition by the endoglucanases that lack cellulose binding module” PLoS One (2013) 8: e59069.
   
• Reis, C.V., Bernardes, A. & Polikarpov, I. “Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase” Acta Cryst. (2013) F69, 588–591.
   
• Rosseto, F.R., Puhl, A.C., Andrade M.O. and Polikarpov, I. “Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris” Acta Cryst. (2013) F69, 137–140.
   
• Serang O., Mollinari M. & Garcica A.A.F. “Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids” PloS One (2012) 7, e30906.
   
• Schlittler, L.A.F.S.; Antunes, A.M.S. & Pereira Jr, N. “Use of patent applications as a tool for technology development investigations on ethanol production from lignocellulosic biomass in Brazil” J. Technology Management & Innovation (2012) 7: 80-90.
   
• De Souza A.P., Leite, D.C.C., Pathatil, S., Hanh, M.G. & Buckeridge, M.S. “Composition and structure of sugarcane cell wall polysaccharides: Implications for second-generation bioethanol production” Bioenergy Research (2013) 6: 564-579.
   
• De Souza A.P.; Arundale R.A.; Dohleman, F.G.; Long S.P.; Buckeridge M.S. “Will the exceptional productivity of Miscanthus x giganteus increase further under rising atmospheric CO2? Agricultural and Forest Meteorology (2013) 171-172: 82-92.
   
• Textor, L.C., Colussi, F., Silveira, R.L., Serpa, V., de Mello, B.L., Squina, F.M., Pereira Jr., N., Skaf, M.S. & Polikarpov, I. “Joint X-ray crystallographic and molecular dynamics study of cellobiohydrolase I from Trichoderma harzianum: deciphering the structural features of cellobiohydrolase catalytic activity” FEBS J. (2013) 280: 56-69.
   
• Vieira, D.S. & Ward, R.J.  “Conformation analysis of a surface loop that controls active site access in the GH11 xylanase a from Bacillus subtilis” (2012) J. Molecular Modelling 18:1473-1479.
   
• Buckeridge, M.S. & de Souza, A.P. “Breaking the “glycomic code” of cell wall polysaccharides may improve second-generation bioenergy production from biomass” Bioenergy Research. (2014) Published on-line. (doi 10.1007/s12155-014-9460-6)
   
• Camilo C.M. & Polikarpov, I. “High-throughput cloning, expression and purification of glycoside hydrolases using Ligation-Independent Cloning (LIC)” Protein Expression Purification (2014) 99: 35 – 42 (doi: 10.1016/j.pep.2014.03.008)
   
• Cardoso-Silva,  C.B., Costa,  E.A., Mancini, M.C., Balsalobre, T.W.A., Canesin, L.E.C., Pinto, L.R., Carneiro, M.S., Garcia, A.A.F., Souza A.P. & Vicentini, R. “De Novo Assembly and Transcriptome Analysis of Contrasting Sugarcane Varieties” PLoS ONE (2014) 9: e88462.
   
• Chandel, A.K., Antunes, F.A.F., Anjos, V., Bell, M.J.V., Rodrigues, L.N., Polikarpov, I., de Azevedo, E.R., Bernardinelli, O.D., Rosa, C.A., Pagnocca F.C., and Silva, S.S. “Multi-scale structural and chemical analysis of sugarcane bagasse in the process of sequential acid-base pretreatment and ethanol production by Scheffersomyces shehatae and Saccharomyces cerevisiae” (2014) Biotechnology for Biofuels 7:63.
   
• Evangelista, D.E., Godoy, A.S., Pereira de Paula, F.F., Henrique-Silva, F. and Polikarpov, I. “Expression, purification, crystallization and preliminary X-ray diffraction analysis of the pectin methylesterase from the sugar cane weevil Sphenophorus levis” Acta Cryst. (2104) F70: 331–334 (doi:10.1107/S2053230X14001630)
   
• Fonseca-Maldonado, R., Vieira, D.S., Alponti, J.S., Bonneil, E., Thibault, P. & Ward, R.J. “Engineering the pattern of protein glycosylation modulates the themostability of a GH11 xylanase. J. Biol. Chem. (2013) 288: 25522 - 25534.
   
• Fonseca-Maldonado, R., Maller, A., Bonneil. E., Thibault, P., Machado-Botelho, C., Ward, R.J., Polizeli, M.L. “Biochemical Properties of Glycosylation and Characterization of a Histidine Acid Phosphatase (Phytase) Expressed in Pichia pastoris” Protein Expr Purif.(2014) 99: 43-49 (doi: 10.1016/j.pep.2014.03.006).
   
• Fonseca-Maldonado, R., Ribeiro, L.F., Furtado, G.P., Alponti, J.S., Arruda, L.M., Machado-Bolelho, C., Davi S Vieira, D.S., Bonneil. E., Thibault, P., Ward, R.J. (2014) “Synergistic action of co-expressed xylanase/laccase mixtures against sugar cane bagasse” Process Biochemistry 49: 1152–1116. (doi 10.1016/j.procbio.2014.03.027)
   
• Garcia, A.A.F., Mollinari, M., Marconi, T.G., Silva, R.R., Serang, O.R., Vicentini, R., Costa, E.A., Mancini, M.C., Garcia, M.O.S., Pastina, M.M., Bundock, P., Henry, R., Souza, G.M., van Sluys, M.-A., Landell, M.G.A., Sampaio, M., Vincentz, M., Pinto, L.R., Vencovsky, R. and Souza, A.P. “SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids” Scientific Reports (2013) 3: 3399.
   
• Gazaffi, R., Margarido, G.R.A., Pastina, M.M., Mollinari, M., Garcia, A.A.F. “A model for quantitative trait loci mapping, linkage phase and segregation pattern estimation for a full-sib progeny” Tree Genetics & Genomes, DOI 10.1007/s11295-013-0664-2, on line a partir de 29.04.2014.
   
• de Giuseppe, P.O., De Arruda Campos Brasil Souza, T.,  Souza, F.H.M., Zanphorlin, L.M., Machado-Botelho, C.,  Ward, R.J.,  Jorge, J.A., Furriel, R.P.M., Murakami, M.T. “Structural basis for glucose tolerance in GH1 β glucosidases” Acta Cryst. (2014) D70, 1631 - 1639   (doi:10.1107/S1399004714006920)
   
• Horta, M.A.C., Vicentini, R., Delabona, P.S., Laborda, P., Crucello, A., Freitas, S., Kuroshu, R.M., Polikarpov, I., Pradella J.G.C. & Souza, A.P. “Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse” PLoS ONE (2014) 9(2): e88689. (doi:10.1371/journal.pone.0088689)
   
• Lembke, C.G., Nishiyana-Junior, M.Y., Ferreira, S.S., Costa, M.D.L., Sato, P.M., Hotta, C.T., Carneiro, M., Loureiro, M., Carrer, H., Endres, L., Hoffmann, H.P., Sanches, M., Menossi, M., Souza, G.M. “Sugarcane Genome Sequencing and Gene Discovery: Getting Closer to Sugar Content, Fibre and Drought Traits” International Sugar Journal (2013) v. Oct, 708-713.
   
  
• Lima, M.A., Gomez, L.D., Steele-King, C.G., Simister, R., Bernardinelli, O.D., Carvalho, M.A., Rezende, C.A., Labate, C.A., deAzevedo, E.R., McQueen-Mason S.J. and Polikarpov, I. “Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production” Biotechnology for Biofuels (2014) 7:10
   
• Lima, M.A., Oliveira-Neto, M., Kadowaki, M.A.S., Rosseto, F.R., Prates, E.T., Squina, F.M., Leme, A.F.P., Skaf, M.S. and Polikarpov, I. “Aspergillus niger beta-glucosidase has a cellulase-like tadpole molecular shape: insights into GH3 beta-glucosidases structure and function” (2013) J. Biol. Chem.  288: 32991 - 3005 (doi: 10.1074/jbc.M113.479279)
   
• Lima, L.H.F., Serpa, V.I., Rosseto, F.R., Sartoria, G.R., Oliveira Neto, M., Martínez, L. and Polikarpov, I. "Small-angle x-ray scattering and structural modeling of full-length cellobiohydrolase I from Trichoderma harzianum" Cellulose (2013) 20: 1573-1585 (doi: 10.1007/s10570-013-9933-3)
   
• Mello, B.L. & Polikarpov, I. “Family 1 carbohydrate binding-modules enhance saccharification rates” (2014) AMB Express, 4:36 (doi:10.1186/s13568-014-0036-9)
   
• De Miranda, R.C.M., De Barros Gomes, E., Pereira, N., Marin-Morales, M.A., Machado, K.M.G. & De Gusmão, N.B. (2013) “Biotreatment of textile effluent in static bioreactor by Curvularia lunata URM 6179 and Phanerochaete chrysosporium URM 6181” Bioresource Technology, 142:361-7.
   
• Moreira Souza F.H., Inocentes, R.F., Ward R.J., Jorge, J.A., Furriel, R.P.M. “Glucose and Xylose Stimulation of a b-glucosidase from the Thermophilic Fungus Humicola insolens: a Kinetic and Biophysical Study” Journal of Molecular Catalysis. B, Enzymatic (2013) 94:119-128.
   
• Ribeiro, L.F., Bressan, F., Furtado, G.P., Meireles, F., Ward, R.J. “d-Xylose detection in Escherichia coli by a xylose binding protein-dependent response” J. Biotechnology, (2014) 168: 440-445. doi: 10.1016/j.jbiotec.2013.10.019.
   
• dos Reis, C.V.,  Bernardes, A. and   Polikarpov, I. “Expression, purification, crystallization and preliminary x-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase” Acta Cryst. (2013) F69, 588–591 (doi:10.1107/S174430911301110X).
   
• Rocha, V.A.L., Maeda, R.N., Santa Anna, L.M.M. & Pereira Jr, N. (2013). Sugarcane bagasse as feedstock for cellulase production by Trichoderma harianum in optimized culture medium. Electronic J. Biotechnology 16, no. 5, 1-16 (DOI: 10.2225/vol16-issue5-fulltext-1).
   
• de Siqueira Ferreira, S; Nishiyama, MY; Paterson, AH; Souza, GM. “Biofuel and Energy Crops: high yield Saccharinae take center stage in the post genomics era” Genome Biology (2013) 14:210.
   
• Silveira, R.L., Stoyanov, S.R., Gusarov, S., Skaf, M. S. & Kovalenko, A. “Plant biomass recalcitrance: effect of hemicellulose composition on nanoscale forces that control cell wall strength” (2013) J. Am. Chem. Soc. 135:19048.
   
• De Souza, A.P., Grandis, A., Leite, D.C.C. & Buckeridge, M.S. “Sugarcane as a Bioenergy Source: History, Performance, and Perspectives for Second-Generation Bioethanol.” Bioenerg Res. (2014)  7:24-35
   
• Souza, F.H.M., Machado-Botelho, C., Meleiro, L.P.,  Fonseca-Maldonado, R., Souza, T.A.C.B., Masui, D.C., Murakami, M.T., Jorge, J.A., Ward, R.J., Furriel, R.P.M. “Gene cloning, expression and biochemical characterization of a glucose- and xylose-stimulated ß-glucosidase from Humicola insolens RP86” J. Mol. Catalysis B: Enzymatic, (2014) 106: 1–10. (doi.org/10.1016/j.molcatb.2014.04.007)
   
• Silveira, C.J.G., Castro, A.M. & Pereira Jr, N. (2013). Effects of agitation and exogenous H2 on bioconversion of sugarcane bagasse into ethanol by Clostridium thermocellum. Electronic J. Biotechnology, 16, no. 6, 1-7 (DOI: 10.2225/vol16-issue6-fulltext-7).
   
• Segato, F., Berto, G.L., Ares de Araújo, E., Muniz, J.R. & Polikarpov, I. “Expression, purification, crystallization and preliminary X-ray diffraction analysis of Aspergillus terreus endo-β-1,4-glucanase from glycoside hydrolase family 12” Acta Cryst. (2014) F70: 267–270 (doi:10.1107/S2053230X13034936).
          
• Tonelotto, M., Pirota, R.D.P.B., Delabona, P.S., Barros, G.O.F., Golubev, A.M., Polikarpov, I. & Farinas, C.S. “Isolation and characterization of a β-galactosidase from a new Amazon Forest strain of Aspergillus niger as a potential accessory enzyme for biomass conversion” Biocatalysis and Biotransformation (2014) 32: 13-22 (doi:10.3109/10242422.2013.801018)
   
• Tamaki, F.K., Textor, L.C., Polikarpov, I. & Marana, S.R. “Sets of covariant residues modulate the activity and thermal stability of GH1 beta-glucosidases” (2014) PLOS ONE  9: e96627 (doi:10.1371/journal.pone.0096627).

Capítulos de Livros

• CANTARELLA, H.; BUCKERIDGE, M.S.; van SLUYS, M.V.; SOUZA, A.P.; Garcia, A.A.F. ; NISHIYAMA JR., M.Y.; MACIEL FILHO, R.; CRUZ, C.H.B. ; SOUZA, G.M. Sugarcane. In: Chittaranjan Kole; Chandrashekhar P Joshi; David R Shonnard. (Org.). Handbook of Bioenergy Crops. 1 ed. Boca Raton, FL: CRC Press, 2012, v. , p. 523-561.
   
• SERPA, V.I. & POLIKARPOV, I. “Enzymes in Bioenergy” Editors: Marcos Silveira S. Buckeridge and Gustavo H H. Goldman in Routes to Cellulosic Ethanol, Springer, 2011, Part 2, 97-113 (DOI: 10.1007/978-0-387-92740-4_7).
   
• Vieira, D.S., Lourenzoni, M.R., Fuzo, C.A., Ward, R.J. E Degrève, L. “Structural Bioinformatics for Protein Engineering” (2012) em: “Innovations in Biotechnology”, pp. 415-438, Editor: Agbo, E.C., InTech - Open Access Publisher, ISBN 978-953-51-0096-6.
   
• Souza-Aguiar, E. F.; Pereira Jr., N.; Donato, A. G. A.; Antunes, A. M. S. “Biofuels and Biochemicals in Brazil” In: Paolo Fornasiero and Mauro Grazianni. (Org.). Renewable Resources and Renewable Energy. 2ed. Boca Raton: CRC Press - Taylor & Francis Group, 2012, p. 391-455.
   
• Grandis, A., De Souza, A.P., Tavares, E.Q.P. & Buckeridge, M.S. (2014). Using Natural Plant Cell Wall Degradation Mechanisms to Improve Second Generation Bioethanol. In: McCann, M., Buckeridge, M.S. & Carpita, N.C. (eds). Plants & Bioenergy, Springer, New York, pp.  211-230.
   
• Afionis, S.,N. Favretto, M. Buckeridge, J. Van Alstine and L.C. Stringer. (2013) The Environment in Latin America and the Caribbean in the aftermath of the Rio+20 Summit, In: Europa Publications (Ed) South America, Central America and the Caribbean 2014, The Europa Regional Surveys of the World, Routledge, pp.17-21. ISBN 978-1-85743-695-2