+44 (0)1904 324230
Email: aneurin.kennerley@york.ac.uk
Twitter: @MagneticDR_K
Basically as a ‘methods development’ group we have lots and lots of fun pushing imaging techniques like MRI to their very limits. We work primarily at 3 Tesla (Human), 7T (pre-clinical) and 9.4T (samples). We use SIEMENS and BRUKER based MR systems. If you want help with anything MRI based – get in touch via email aneurin.kennerley@york.ac.uk
My biomedical imaging research works towards answering important and clinically relevant questions, be that in neuroimaging (particularly functional MRI), Oncology, Cardiovascular research, Musculoskeletal or Liver/Gastrointestinal medicine. Unfortunately, even though use is wide ranging, in the majority of cases an in-depth understanding of the complex MRI signal source (in terms of the underlying physics, chemistry and biology) is lacking. I address this by utilising novel multi-model imaging approaches; using data from a combination of imaging techniques to parameterise biophysical models. In turn, data from these models can feedback to the imaging laboratory helping further develop and refine these techniques. As a member of the Centre for Hyperpolarised Magnetic Resonance I also explore novel physical chemistry to push the signal detection limits. The above approaches help constantly push (push constantly; is that a split infinitive Mr Spock?) MR for improved diagnostics and novel therapeutics.
Examples of ongoing projects are highlighted below.
My preclinical research focuses on developing multi-modal imaging technology (MRI and intrinsic optical imaging spectroscopy) to investigate the underlying haemodynamic mechanisms of the functional (f)MRI Blood Oxygenation Level Dependent (BOLD) signal.
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Figure 1 – Development of multi-modal fMRI and optical imaging; A) methods involved; B) using MCS to predict BOLD fMRI signal from the haemodynamics with a basic homogeneous tissue model and MRI parameterised heterogeneous tissue model. The latter shows a better fit to experimental data.
I am currently working on improvements to the optical recording from brain – implanting spatial frequency domain imaging in preclinical models to estimate changes in scattering which can be attributed to cellular swelling during activity. This imaging technique will be combined with diffusion weighted fMRI which is also related to microstructural changes in cell structure. We collect supporting diffusion weighted fMRI data in human at the York Neuro-imaging Centre.
An arm of this research also concerns the laminar based information that can be captured with high resolution fMRI.
Figure 2 – We utilise concurrent fMRI and optical measures to explore the exact contrast mechanisms of layer-dependent VASO fMRI. Quantified cortical layer profiling is demonstrated and in agreement between both VASO and contrast enhanced fMRI (using monocrystalline iron oxide nanoparticles, MION) in rodent models. Responses show high spatial localisation to layers of cortical excitatory and inhibitory processing independent of confounding large draining veins which hamper BOLD fMRI studies. While we find increased VASO based CBV reactivity (3.1 ± 1.2 fold increase) in humans compared to rats it is demonstrated that this reflects differences in stimulus design rather than confounds of the VASO signal source.
The BOLD fMRI signal is not a direct measure of neuronal activity. It is a confound of the haemodynamic response, in turn driven by neuronal activity. Using X-nuclei NMR we can measure metabolic activity directly, targeting important molecules like adenosine triphosphate (ATP). Our current research is pushing magnetisation transfer based 31P MRS to help us understand mitochondrial function in health, disease and in response to novel treatment.
Figure 3 – Preliminary (a) non-localised 31P magnetisation transfer MRS measurements from the healthy human brain. Magnetisation transfer through PCr/ATP exchange causes a quantifiable decrease in the PCr peak integral as a marker of cellular metabolism in-vivo. (b) All MRS data will be correlated to estimates of cytochrome-c light absorption determined from parameterised Monte Carlo simulations of light transport.
To improve diagnostic capability of MRI, increased sensitivity to atypical activity of biomolecules associated with disease progression is urgently required. Their inherent low abundance makes measurement with standard MRI problematic. ‘Hyperpolarised’ contrast agents permitting detection of such biomolecules presents as a novel solution. At the University-of-York we empower a faster/cheaper hyperpolarisation method known as signal amplification by reversible exchange (SABRE). We are now moving towards X-nuclei detection and improvements in solvent approach to propel this ‘next-generation’ technology towards clinical uptake; building foundations needed to deliver real patient impact. Target metabolites include pyruvate to link into existing Dynamic Nuclear polarisation (DNP) research and our ongoing research efforts in the field of oncology.
Figure 4 – Recent developments towards in-vivo 13C based SABRE hyperpolarisation detection. (a) Target substrate 4,5-di(phenyl-d5)-3,6-d2-pyridazine has been optimised to 25% polarisation in DCM. Subsequent phantom based Chemical Shift Image (CSI) detection utilised a preclinical 7T MRI system with dual tuned 1H/13C 72mm ID volume coil. 13C image superimposed onto 1H structural image. 13C CSI image integrated over detectable peak @ 136ppm in resultant spectrum (b). FID based signal decay with 10o flip angle used to characterise T1 lifetime of 22s in agreement with published literature.
We also push X-nuclei MRI development in the field of oncology. Our research shows that Na+ plays a vital role in disease progression, making non-invasive 23Na-MRI an informative diagnostic tool. Indeed, our research in this field is proving that 23Na MR detection/imaging can be an improved indicator of breast cancer as routine 1H diffusion MR measures. We continue to develop this technique using improved detection antennae (with collaborators in Engineering).
Figure 5 - 23Na MRI for assessing mammary tumour ionic microenvironment in mice. (a) 23Na MR scans confirm raised Na+ in tumour tissue with longitudinal assessment showing significantly lower Na+ after treatment with chemotherapy. (b) Hypoxia mimicked with the HIF stabiliser DMOG (1 µM) in breast cancer cells shows increased intracellular Na+ (using indicator SBFI-AM) over controls. Sodium-potassium ion pump inhibitor (Ouabain, 50mM) used as a positive control. (c) 3.5 fold theoretical gain in SNR possible through cooling single RF coil loop with liquid N2 (77K). Increase in SNR can be used to increase resolution & probe response heterogeneity. (d) Apparent diffusion coefficient (ADC) MRI (standard clinical approach for diagnosing cancer) compared with 23Na MRI. AUR-ROC plot (and confusion matrices - not shown) confirm similar detection accuracy between thermal 23Na-MRI and ADC. Detection accuracy improves if both metrics are considered.
Novel drug delivery mechanisms are currently a hot topic; a recent successful multidisciplinary research project I was profoundly involved in used Iron tagged macrophages to carry anti-cancer drugs to tumour sites within the body. I have shown by in vitro and in vivo that by pulsing the magnetic field gradients on an MRI system we can steer these labelled macrophages in a given direction. Thus when gradient targeting is applied towards tumour sites there is an increased uptake of the macrophage cells (upwards of 800% increase) and so the drug for improved therapy.
Figure 6 – in-vitro demonstration of magnetic resonance targeting. The MR imaging gradients can be pulsed in a given direction to effectively ‘steer’ iron labelled particles in that direction. This can lead to a significant uptake of particles into a specific area – for example a tumour site to deliver therapy.
The fast switching gradients on modern MRI scanners, alongside iterative image reconstruction, now permit deployment of real time imaging methodologies. Alongside important cardiac applications, real time (RT) MRI offers new opportunities for the non-invasive functional monitoring of the mechanics of speech, swallowing and breathing. Quantitative monitoring of such mechanics finds relevance before and after major ablative/reconstructive maxillofacial surgery. Many patients, in particular those with head/neck cancer or major trauma, have serious enduring post-operative problems; e.g. difficulty in swallowing and speech. These long-term problems lead to malnutrition, isolation and depression. RT MRI methods in this context can improve surgical planning, post-operative short and long term rehabilitation and monitoring. Furthermore, RT-MRI can provide insight into adaption following major surgery in this region. In collaboration with Angelika Sebald (Computer science) we are assessing the safety/feasibility of RT-MRI and establishing protocols for the evaluation of swallowing and speech. Data from this unique monitoring methodology will help improve the current less than optimum post-treatment support and patient management; ultimately improving the quality of life of maxillofacial patients.
Some of our real time imaging work is showcased on the following public information site aimed at maxillofacial patients and carers: Maxfacts.uk
H-index = 22; i-10 index = 34 (as of 23rd March 2021)
Visit Aneurin's Google Scholar page for a full list of publications.
Dr Andrew D James – Biology: 23Na MRI in oncology
Dr Elizabeth J Fear – HYMS: 31P MRS in neuroscience
Frida Torkelsen – Chemistry: Neuronal cell swelling
Isaac Watson – Electrical Engineering: Real Time MRI
Suzanna Harrison – Chemistry: 31P MRS Bacteria
Ms. Gulmira Kinzhekeyeva – Chemistry: Pyruvate Hyperpolarisation
Ms. Isabel Farr – Natural Science: Functional brain imaging
(M.Sc) Mr. Joseph Stones – Natural Science: Monte Carlo modelling of light transport
(M.Chem) Mr. Aaron White – Chemistry: Magnetic Resonance Targeting
(Summer Student) Mr. Lloyd Bollans – Chemistry: Real Time MRI & Machine Learning
(Summer Student) Mr. Lewis Patten – Mathematics: Machine Learning in Oncology MRI
(Summer Student) Mr. Claire Maden – Mathematics: Machine Learning in function MRI
(Visitor) Mr. Paolo R Dicarolo – Meyer Children’s Hospital, Florence
For current PhD opportunities, see main York Chemistry pages.
Applications from self-funded PhD/PDRA level researchers and Erasmus students are welcomed; contact Aneurin directly for advice and details of current projects (aneurin.kennerley@york.ac.uk).
Aneurin is a keen advocate of public engagement in research. He has previously secured over £18,500 to develop a public engagement programs around neuro-imaging research.
His motivation stems from research by the Institute of Physics which showed that the uptake of Physics in higher education is on the increase (~5% per year with only a corresponding 0.6% increase in UK population). However, it is still viewed by many as a stereotypically dry subject for 'geeks' - perhaps an imprudent impression that leads to the worryingly high gender gap for the subject (23:87 female to male ratio http://www.iop.org/news/12/aug/page_56802.html). Topics within physics include electromagnetism, quantum theory, nuclear and particle physics; all 'theoretically heavy' subjects. With the current shortage of specialist physics teachers, it can be difficult to inspire students onto the next level - with many finding physics dull/boring and without real application.
Aneurin aims to dispel the myth that physics is dreary through fun and interactive workshop demonstrations of real-life applications of these complex physical ideas. He does this through the use of Magnetic Resonance Imaging (MRI) technology. MRI not only spans complex physical topics (e.g. Electromagnetism, Quantum theory ad nuclear spin physics) but when applied to brain imaging it bridges the scientific disciplines. Physics helps us understand 'how' the brain is imaged; Mathematics helps us interpret the data; chemistry/biology/psychology help us to understand the brain; and ultimately engineering helps design and build the systems to allow all this to happen.
Aneurin’s unique twist to pique interest and help introduce the science behind brain imaging involves pitting a mind-reader against functional (f)MRI technology. Mind-reading, perhaps through modern mentalists such as Derren Brown, has remained ever popular and intriguing. However, is mind reading really possible? Although science is yet to prove the ability of the brain to gain information about an object, person, or location through means other than the known senses, research using fMRI has provided demonstrations of thought identification; in some sense, mind reading. My events include live feats of mind reading performed on members of the public (old and young) to garner interest. Using this as a springboard, the science behind thought identification with fMRI is explained with interactive props (including a portable Earth Field MRI scanner), thus giving the audience a picture of how physics and engineering can help understand how the brain works and inspiring them to continue an education involving physics and engineering.
Aneurin is originally from Wolverhampton in the West Midlands (UK). He studied experimental Physics (MPhys) at the University of Newcastle upon Tyne specialising in particle physics. In 2002, he moved to the University of Sheffield to undertake a PhD in Neuroimaging under the supervision of Professor John Mayhew. His research involved the combination of MRI with optical imaging to investigate and model the heamodynamic response underlying the BOLD (his mom still thinks he works for a washing powder company) fMRI signal. He stayed in Sheffield to complete post-doctoral training before being appointed as a research fellow in charge of a multi-million-pound high field pre-clinical MRI facility at the University of Sheffield. His current research interest involves the application of imaging technologies to help answer burning bio-chemical questions.
He lives in South Yorkshire with his wife Natalie and their two sons Noah and Aled. Outside of his research Aneurin is an avid strategy board-gamer and painter. He set up and ran a city wide gaming club in Sheffield. He is also a sci-fi nerd and occasional moonlights as a mind reader. Ask him to read your mind!